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:mod:`gromacs.formats` -- Accessing various files ================================================= This module contains classes that represent data files on disk. Typically one creates an instance and - reads from a file using a :meth:`read` method, or - populates the instance (in the simplest case with a :meth:`set` method) and the uses the :meth:`write` method to write the data to disk in the appropriate format. For function data there typically also exists a :meth:`plot` method which produces a graph (using matplotlib). The module defines some classes that are used in other modules; they do *not* make use of :mod:`gromacs.tools` or :mod:`gromacs.cbook` and can be safely imported at any time. Classes ------- .. autoclass:: XVG :members: .. autoclass:: NDX :members: .. autoclass:: uniqueNDX :members: .. autoclass:: GRO :members: (Not implemented yet)
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XVG Class that represents the numerical data in a grace xvg file. |
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NDX Gromacs index file. |
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IndexSet set which defines '+' as union (OR) and '-' as intersection (AND). |
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uniqueNDX Index that behaves like make_ndx, i.e. |
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GRO Class that represents a GROMOS (gro) structure file. |
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MDP Class that represents a Gromacs mdp run input file. |
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Convert input to a numerical type if possible.
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