Package gromacs :: Module tools :: Class Pdb2gmx

Class Pdb2gmx

     object --+        
              |        
   core.Command --+    
                  |    
core.GromacsCommand --+
                      |
                     Pdb2gmx

Gromacs tool 'pdb2gmx'.

Instance Methods

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Inherited from core.GromacsCommand: __init__, check_failure, transform_args

Inherited from core.GromacsCommand (private): _build_arg_list, _combine_arglist, _combineargs, _get_gmx_docs, _run_command

Inherited from core.Command: Popen, __call__, commandline, help, run

Inherited from core.Command (private): _commandline

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

[hide private]

command_name = 'pdb2gmx'
Derive a class from command; typically one only has to set *command_name* to the name of the script or executable.

Inherited from core.GromacsCommand: doc_pattern, failuremodes, gmxfatal_pattern

Properties

[hide private]

Inherited from core.GromacsCommand: gmxdoc

Inherited from object: __class__