Package gromacs :: Module tools :: Class GridMAT_MD

Class GridMAT_MD

  object --+    
           |    
core.Command --+
               |
              GridMAT_MD

External tool 'GridMAT-MD.pl'

GridMAT-MD: A Grid-based Membrane Analysis Tool for use with Molecular Dynamics.

This GridMAT-MD is a patched version of the original GridMAT-MD.pl v1.0.2, written by WJ Allen, JA Lemkul and DR Bevan. The original version is available from the GridMAT-MD home page,

Please cite

W. J. Allen, J. A. Lemkul, and D. R. Bevan. (2009) "GridMAT-MD: A Grid-based Membrane Analysis Tool for Use With Molecular Dynamics." J. Comput. Chem. 30 (12): 1952-1958.

when using this programme.

Usage:

Arguments:

config : See the original documentation for a description for the configuration file.
structure : A gro or pdb file that overrides the value for bilayer in the configuration file.

Instance Methods

[hide private]

Inherited from core.Command: Popen, __call__, __init__, commandline, help, run, transform_args

Inherited from core.Command (private): _combine_arglist, _commandline, _run_command

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

[hide private]

command_name = '/sansom/gfio/users/oliver/Library/python/GromacsWrap...
Derive a class from command; typically one only has to set *command_name* to the name of the script or executable.

Properties

[hide private]

Inherited from object: __class__

Class Variable Details

[hide private]

command_name

Derive a class from command; typically one only has to set *command_name*
to the name of the script or executable. The full path is required if it
cannot be found by searching :envvar:`PATH`.

Value:

'/sansom/gfio/users/oliver/Library/python/GromacsWrapper/gromacs/external/Gr
idMAT-MD_v1.0.2/GridMAT-MD.pl'