Class RMSD

source code

 object --+    
          |    
core.Plugin --+
              |
             RMSD

*RMSD* plugin.

Calculation of the root mean square distance (RMSD) of a protein
structure over the course of a MD simulation.

The trajectory is always fitted to the reference structure in the
tpr file.

.. class:: RMSD([name[, simulation]])

:Arguments:
    *name* : string
        plugin name (used to access it)
    *simulation* : instance
        The :class:`gromacs.analysis.Simulation` instance that owns the plugin.