| Trees | Indices | Help |
|
|---|
|
|
Bio.PDB.StructureBuilder.StructureBuilder --+
|
SloppyStructureBuilder
Cope with resSeq < 10,000 limitation by just incrementing internally.
Solves the follwing problem with :class:`Bio.PDB.StructureBuilder.StructureBuilder`:
Q: What's wrong here??
Some atoms or residues will be missing in the data structure.
WARNING: Residue (' ', 8954, ' ') redefined at line 74803.
PDBConstructionException: Blank altlocs in duplicate residue SOL (' ', 8954, ' ') at line 74803.
A: resSeq only goes to 9999 --> goes back to 0 (PDB format is not really good here)
.. warning:: H and W records are probably not handled yet (don't have examples to test)
|
|||
|
|||
|
|||
|
Inherited from Inherited from |
|||
|
|||
|
Initiate a new Residue object.
Arguments:
o resname - string, e.g. "ASN"
o field - hetero flag, "W" for waters, "H" for
hetero residues, otherwise blanc.
o resseq - int, sequence identifier
o icode - string, insertion code
|
| Trees | Indices | Help |
|
|---|
| Generated by Epydoc 3.0.1 on Sat Jun 12 15:59:33 2010 | http://epydoc.sourceforge.net |