jgromacs.data
Class SequencePosition

java.lang.Object
  jgromacs.data.SequencePosition

All Implemented Interfaces:

java.lang.Cloneable

public class SequencePosition
extends java.lang.Object
implements java.lang.Cloneable

Objects of this class represent a single sequence position

Constructor Summary

SequencePosition()
Constructs a new SequencePosition object

SequencePosition(int index, ResidueType residueType)
Constructs a new SequencePosition object of given index and residue type

SequencePosition(int index, ResidueType residueType, java.lang.String annotation)
Constructs a new SequencePosition object of given index, residue type and annotation

SequencePosition(int index, java.lang.String annotation)
Constructs a new SequencePosition object of given index and annotation

SequencePosition(ResidueType residueType, java.lang.String annotation)
Constructs a new SequencePosition object of residue type and annotation

Method Summary

java.lang.Object	clone() Returns an identical SequencePosition object
boolean	equals(java.lang.Object other) Returns true if the two sequence positions are identical
java.lang.String	getAnnotation() Returns the annotation of sequence position
int	getIndex() Returns the index of sequence position
ResidueType	getResidueType() Returns the residue type of sequence position
int	hashCode() Returns hash code
void	setAnnotation(java.lang.String annotation) Sets the annotation of sequence position
void	setIndex(int index) Sets the index of sequence position
void	setResidueType(ResidueType residueType) Sets the residue type of sequence position
java.lang.String	toString() Returns the String representation of sequence position

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

SequencePosition

public SequencePosition()

Constructs a new SequencePosition object

SequencePosition

public SequencePosition(int index,
                        ResidueType residueType)

Constructs a new SequencePosition object of given index and residue type

Parameters:

index - index

residueType - residue type

SequencePosition

public SequencePosition(int index,
                        java.lang.String annotation)

Constructs a new SequencePosition object of given index and annotation

Parameters:

index - index

annotation - annotation

SequencePosition

public SequencePosition(ResidueType residueType,
                        java.lang.String annotation)

Constructs a new SequencePosition object of residue type and annotation

Parameters:

residueType - residue type

annotation - annotation

SequencePosition

public SequencePosition(int index,
                        ResidueType residueType,
                        java.lang.String annotation)

Constructs a new SequencePosition object of given index, residue type and annotation

Parameters:

index - index

residueType - residue type

annotation - annotation

Method Detail

getIndex

public int getIndex()

Returns the index of sequence position

Returns:

index of sequence position

setIndex

public void setIndex(int index)

Sets the index of sequence position

Parameters:

index - index of sequence position

getAnnotation

public java.lang.String getAnnotation()

Returns the annotation of sequence position

Returns:

annotation of sequence position

setAnnotation

public void setAnnotation(java.lang.String annotation)

Sets the annotation of sequence position

Parameters:

annotation - annotation of sequence position

getResidueType

public ResidueType getResidueType()

Returns the residue type of sequence position

Returns:

residue type of sequence position

setResidueType

public void setResidueType(ResidueType residueType)

Sets the residue type of sequence position

Parameters:

residueType - residue type of sequence position

clone

public java.lang.Object clone()

Returns an identical SequencePosition object

Overrides:

clone in class java.lang.Object

Returns:

clone of the sequence position

equals

public boolean equals(java.lang.Object other)

Returns true if the two sequence positions are identical

Overrides:

equals in class java.lang.Object

Parameters:

other - the other sequence position

hashCode

public int hashCode()

Returns hash code

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Returns the String representation of sequence position

Overrides:

toString in class java.lang.Object

Returns:

String representation