Package gromacs :: Package analysis :: Package plugins :: Module trajectories :: Class _Trajectories

Class _Trajectories

         object --+        
                  |        
utilities.FileUtils --+    
                      |    
            core.Worker --+
                          |
                         _Trajectories

Trajctories worker class.

Instance Methods

[hide private]

__init__(self, **kwargs)
Set up Trajectories

source code

_register_hook(self, **kwargs)
Run when registering; requires simulation.

source code

run(self, force=False, **gmxargs)
Write new trajectories

source code

analyze(self, **kwargs)
No postprocessing.

source code

plot(self, **kwargs)
No plotting.

source code

Inherited from core.Worker: figdir, plugindir, savefig, store_xvg, topdir

Inherited from utilities.FileUtils: __repr__, check_file_exists, filename, infix_filename

Inherited from utilities.FileUtils (private): _init_filename

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __str__

Class Variables

[hide private]

Inherited from utilities.FileUtils: default_extension

Instance Variables

[hide private]

Inherited from core.Worker: plugin, plugin_name

Inherited from utilities.FileUtils: real_filename

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, **kwargs)
(Constructor)

source code

Set up Trajectories

Overrides: object.__init__

Arguments: None at the moment, everything is hard coded.

_register_hook(self, **kwargs)

source code

Run when registering; requires simulation.

Overrides: core.Worker._register_hook

run(self, force=False, **gmxargs)

source code

Write new trajectories

Overrides: core.Worker.run

analyze(self, **kwargs)

source code

No postprocessing.

Overrides: core.Worker.analyze

plot(self, **kwargs)

source code

No plotting.

Overrides: core.Worker.plot

Class _Trajectories

__init__(self, **kwargs) (Constructor)

_register_hook(self, **kwargs)

run(self, force=False, **gmxargs)

analyze(self, **kwargs)

plot(self, **kwargs)

init(self, **kwargs)
(Constructor)