Package gromacs :: Package analysis :: Package plugins :: Module rmsd :: Class RMSD
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Class RMSD

source code

 object --+    
          |    
core.Plugin --+
              |
             RMSD

*RMSD* plugin.

Calculation of the root mean square distance (RMSD) of a protein
structure over the course of a MD simulation.

The trajectory is always fitted to the reference structure in the
tpr file.

.. class:: RMSD([name[, simulation]])

:Arguments:
    *name* : string
        plugin name (used to access it)
    *simulation* : instance
        The :class:`gromacs.analysis.Simulation` instance that owns the plugin.

Nested Classes [hide private]
  worker_class
actual plugin :class:`gromacs.analysis.core.Worker` class (name with leading underscore)
Instance Methods [hide private]

Inherited from core.Plugin: __init__, register

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Instance Variables [hide private]

Inherited from core.Plugin: plugin_name, simulation, worker

Properties [hide private]

Inherited from object: __class__