## Uses of Classjgromacs.db.ResidueType

Packages that use ResidueType
jgromacs.data jgromacs.data is a collection of classes representing multiple levels of structural data

Uses of ResidueType in jgromacs.data

Methods in jgromacs.data that return ResidueType
` ResidueType` `Alignment.getMostFrequentResidueType(int i)`
Returns the most frequent residue type in column #i of the alignment
` ResidueType` `SequencePosition.getResidueType()`
Returns the residue type of sequence position
` ResidueType` `Residue.getResidueType()`
Returns the type of residue
` ResidueType` `Sequence.getResidueTypeOfPosition(int i)`
Returns the residue type of sequence position #i
` ResidueType` `Sequence.getResidueTypeOfPositionOfIndex(int index)`
Returns the residue type of sequence position of given index

Methods in jgromacs.data with parameters of type ResidueType
` void` ```Sequence.addPosition(int index, ResidueType type)```
Adds a new position of given index and residue type to the sequence
` void` ```Sequence.addPosition(int index, ResidueType type, java.lang.String annotation)```
Adds a new position of given index, residue type and annotation to the sequence
` void` ```Sequence.addPosition(ResidueType type, java.lang.String annotation)```
Adds a new position of given residue type and annotation to the sequence
` void` ```Sequence.insertPosition(int i, int index, ResidueType type)```
Inserts sequence position of given index and residue type to position #i Note that you may have to re-index sequence positions after using this method
` void` ```Sequence.insertPosition(int i, int index, ResidueType type, java.lang.String annotation)```
Inserts sequence position of given index, residue type and annotation to position #i Note that you may have to re-index sequence positions after using this method
` void` ```Sequence.insertPosition(int i, ResidueType type, java.lang.String annotation)```
Inserts sequence position of given residue type and annotation to position #i Note that you may have to re-index sequence positions after using this method
` void` ```Sequence.setPosition(int i, int index, ResidueType type)```
Replaces position #i with the a sequence position of given index and residue type
` void` ```Sequence.setPosition(int i, int index, ResidueType type, java.lang.String annotation)```
Replaces position #i with the a sequence position of given index, residue type and annotation
` void` ```Sequence.setPosition(int i, ResidueType type, java.lang.String annotation)```
Replaces position #i with the a sequence position of given residue type and annotation
` void` ```Sequence.setPositionByIndex(int index, ResidueType type)```
Replaces the position of given index with the a sequence position of given residue type
` void` ```Sequence.setPositionByIndex(int index, ResidueType type, java.lang.String annotation)```
Replaces the position of given index with the a sequence position of given residue type and annotation
` void` `SequencePosition.setResidueType(ResidueType residueType)`
Sets the residue type of sequence position
` void` `Residue.setResidueType(ResidueType residueType)`
Sets the type of residue

Constructors in jgromacs.data with parameters of type ResidueType
```Residue(int index, java.lang.String name, ResidueType residueType)```
Constructs a new Residue object of given index, name and residue type
```Residue(int index, java.lang.String name, java.lang.String chainID, ResidueType residueType)```
Constructs a new Residue object of given index, name, chainID and residue type
```SequencePosition(int index, ResidueType residueType)```
Constructs a new SequencePosition object of given index and residue type
```SequencePosition(int index, ResidueType residueType, java.lang.String annotation)```
Constructs a new SequencePosition object of given index, residue type and annotation
```SequencePosition(ResidueType residueType, java.lang.String annotation)```
Constructs a new SequencePosition object of residue type and annotation