Uses of Class
jgromacs.data.Alignment

Packages that use Alignment

jgromacs.data	jgromacs.data is a collection of classes representing multiple levels of structural data
jgromacs.io	jgromacs.io provides parsers for reading and methods for writing GROMACS files

Uses of Alignment in jgromacs.data

Methods in jgromacs.data that return Alignment

Alignment

Alignment.getCollapsedAlignment() Returns the collapsed alignment in which only the match columns are included (i.e.

Uses of Alignment in jgromacs.io

Methods in jgromacs.io that return Alignment

static Alignment

IOData.readAlignmentFromFASTA(java.lang.String filename) Reads an alignment from the given FASTA file

Methods in jgromacs.io with parameters of type Alignment

static void

IOData.writeAlignmentToFASTA(java.lang.String filename, Alignment alignment) Writes an alignment to the given FASTA file