|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use Residue | |
---|---|
jgromacs.data | jgromacs.data is a collection of classes representing multiple levels of structural data |
Uses of Residue in jgromacs.data |
---|
Methods in jgromacs.data that return Residue | |
---|---|
Residue |
Structure.getResidue(int i)
Returns residue #i of the structure |
Residue |
Structure.getResidueByIndex(int index)
Returns the residue of given index |
Residue |
Structure.getResidueByIndex(int index,
java.lang.String chainID)
Returns the residue of given index and given chain ID |
Methods in jgromacs.data that return types with arguments of type Residue | |
---|---|
java.util.ArrayList<Residue> |
Structure.getResiduesAsArrayList()
Returns residues as an ArrayList object |
Methods in jgromacs.data with parameters of type Residue | |
---|---|
void |
Structure.addResidue(Residue residue)
Adds a new residue to the structure |
double |
Residue.distanceAlphaCarbons(Residue other)
Returns the Euclidean distance of alpha-carbon atoms of this amino acid an another |
double |
Residue.distanceClosest(Residue other)
Returns the Euclidean distance of the closest atoms of this amino acid and another |
double |
Residue.distanceClosestHeavy(Residue other)
Returns the Euclidean distance of the closest heavy atoms of this amino acid and another |
void |
Structure.removeResidue(Residue residue)
Removes a residue from the structure |
void |
Structure.setResidue(int i,
Residue residue)
Replaces residue #i with a new residue |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |