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Packages that use jgromacs.data | |
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jgromacs.analysis | jgromacs.analysis is a collection of classes providing static methods for various analysis tasks |
jgromacs.data | jgromacs.data is a collection of classes representing multiple levels of structural data |
jgromacs.io | jgromacs.io provides parsers for reading and methods for writing GROMACS files |
Classes in jgromacs.data used by jgromacs.analysis | |
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Angle
Objects of this class represent an angle |
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Atom
Objects of this class represent a single atom |
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FrameIndexSet
Objects of this class represent a single frame index set |
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IndexSet
Objects of this class represent a single index set |
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Point3D
Objects of this class represent a single 3D point |
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PointList
Objects of this class represent a list of 3D points |
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Structure
Objects of this class represent a single structure |
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Trajectory
Objects of this class represent a single trajectory |
Classes in jgromacs.data used by jgromacs.data | |
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Alignment
Objects of this class represent a sequence alignment |
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Atom
Objects of this class represent a single atom |
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FrameIndexSet
Objects of this class represent a single frame index set |
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IndexSet
Objects of this class represent a single index set |
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IndexSetList
Objects of this class represent a list of index sets |
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Point3D
Objects of this class represent a single 3D point |
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PointList
Objects of this class represent a list of 3D points |
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Residue
Objects of this class represent a single residue |
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Sequence
Objects of this class represent a single amino acid sequence |
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SequencePosition
Objects of this class represent a single sequence position |
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Structure
Objects of this class represent a single structure |
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Trajectory
Objects of this class represent a single trajectory |
Classes in jgromacs.data used by jgromacs.io | |
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Alignment
Objects of this class represent a sequence alignment |
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IndexSet
Objects of this class represent a single index set |
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IndexSetList
Objects of this class represent a list of index sets |
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Sequence
Objects of this class represent a single amino acid sequence |
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Structure
Objects of this class represent a single structure |
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Trajectory
Objects of this class represent a single trajectory |
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