Uses of Class
jgromacs.data.Residue

Packages that use Residue
jgromacs.data jgromacs.data is a collection of classes representing multiple levels of structural data 
 

Uses of Residue in jgromacs.data
 

Methods in jgromacs.data that return Residue
 Residue Structure.getResidue(int i)
          Returns residue #i of the structure
 Residue Structure.getResidueByIndex(int index)
          Returns the residue of given index
 Residue Structure.getResidueByIndex(int index, java.lang.String chainID)
          Returns the residue of given index and given chain ID
 

Methods in jgromacs.data that return types with arguments of type Residue
 java.util.ArrayList<Residue> Structure.getResiduesAsArrayList()
          Returns residues as an ArrayList object
 

Methods in jgromacs.data with parameters of type Residue
 void Structure.addResidue(Residue residue)
          Adds a new residue to the structure
 double Residue.distanceAlphaCarbons(Residue other)
          Returns the Euclidean distance of alpha-carbon atoms of this amino acid an another
 double Residue.distanceClosest(Residue other)
          Returns the Euclidean distance of the closest atoms of this amino acid and another
 double Residue.distanceClosestHeavy(Residue other)
          Returns the Euclidean distance of the closest heavy atoms of this amino acid and another
 void Structure.removeResidue(Residue residue)
          Removes a residue from the structure
 void Structure.setResidue(int i, Residue residue)
          Replaces residue #i with a new residue