Uses of Class
jgromacs.data.IndexSetList

Packages that use IndexSetList
jgromacs.data jgromacs.data is a collection of classes representing multiple levels of structural data 
jgromacs.io jgromacs.io provides parsers for reading and methods for writing GROMACS files 
 

Uses of IndexSetList in jgromacs.data
 

Methods in jgromacs.data that return IndexSetList
 IndexSetList Structure.getDefaultIndexSetList()
          Returns the list of default index sets
 IndexSetList Alignment.getMatchPositionIndexSets()
          Returns the list of match position index sets (i.e.
 

Uses of IndexSetList in jgromacs.io
 

Methods in jgromacs.io that return IndexSetList
static IndexSetList IOData.readIndexSetListFromNDX(java.lang.String filename)
          Reads an index set list from the given NDX file
 

Methods in jgromacs.io with parameters of type IndexSetList
static void IOData.writeIndexSetListToNDX(java.lang.String filename, IndexSetList indexsetlist)
          Writes an index set list to the given NDX file