A C D E F G H I J L M P R S T U W

W

weightedSuperposeTo(PointList, PointList, ArrayList<Double>) - Static method in class jgromacs.analysis.Superposition

Calculates the weighted superposition of a point list to another

weightedSuperposeTo(Structure, Structure, ArrayList<Double>) - Static method in class jgromacs.analysis.Superposition

Calculates the weighted superposition of a structure to another

weightedSuperposeTo(Trajectory, PointList, ArrayList<Double>) - Static method in class jgromacs.analysis.Superposition

Calculates the weighted superposition of each frame of a trajectory to a common reference frame

weightedSuperposeTo(Trajectory, Structure, ArrayList<Double>) - Static method in class jgromacs.analysis.Superposition

Calculates the weighted superposition of each frame of a trajectory to a common reference frame

writeAlignmentToFASTA(String, Alignment) - Static method in class jgromacs.io.IOData

Writes an alignment to the given FASTA file

writeArrayListToFile(ArrayList<Double>, String) - Static method in class jgromacs.io.IOMath

Writes an ArrayList to the given file

writeIndexSetListToNDX(String, IndexSetList) - Static method in class jgromacs.io.IOData

Writes an index set list to the given NDX file

writeIndexSetToNDX(String, IndexSet) - Static method in class jgromacs.io.IOData

Writes an index set to the given NDX file

writeMatrixToFile(Matrix, String) - Static method in class jgromacs.io.IOMath

Writes a Matrix to the given file

writeScalarToFile(double, String) - Static method in class jgromacs.io.IOMath

Writes a scalar to the given file

writeSequenceToFASTA(String, Sequence) - Static method in class jgromacs.io.IOData

Writes a sequence to the given FASTA file

writeStructureToGRO(String, Structure) - Static method in class jgromacs.io.IOData

Writes a structure to the given GRO file

writeStructureToPDB(String, Structure) - Static method in class jgromacs.io.IOData

Writes a structure to the given PDB file